Beginner's Guide to R Markdown Syntax [With Cheat Sheet] (2024)

Beginner's Guide to R Markdown Syntax [With Cheat Sheet] (1)

You probably already know about the lightweight Markdown markup language. Refer to our Markdown guide, if you're new to the concept. Overall, it is a simple and effective language for creating plain-text documents.

However, Markdown may not be enough to make detailed reports or technical documents.

Hence, R Markdown as an interactive file format came into existence back in 2014 thanks to packages like knitr and Pandoc. It combines plain text with in-line R code, helping you make a dynamic document.

To create R Markdown documents, you can use various IDEs and extensions to make it possible. However, the official IDE that helps you do it is RStudio. So, in this article, we will focus on learning R Markdown syntax using RStudio.

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If you did not know, R programming language is used for statistical computing, graphics representation, and reporting.

Suggested Read 📖

How to Install and Use R on UbuntuBrief: This tutorial teaches you to install R on Ubuntu. You’ll also learn how to run your first R program in Ubuntu using various methods. R, together with Python, is the most commonly used programming language for statistical computing and graphics, making it easy to work with data. WithIt's FOSSSergiu

Setting RStudio

RStudio makes it easy to work with R Markdown by its setup process. You just need to install a package, and you are done for the most part!

Once you have RStudio installed, head to the Tools menu and select the Install Packages option.

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On the new dialog box, search for rmarkdown and install it.

Beginner's Guide to R Markdown Syntax [With Cheat Sheet] (5)

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To use code chunks like python, you need to install additional packages. RStudio will prompt you to install the required packages when you try to include them in your document.

Once installed, you can start a new rmarkdown document by selecting File > New > RMarkdown.

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This will prompt you to add some information regarding the document (metadata for the file). Fill those up.

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Or you can create an empty document to start fresh.

RMarkdown Syntax

Since it is just "enhanced Markdown," most syntax remains the same.

There would be some differences when you add things not usually supported with Markdown, like tables, math equations, code chunks, etc.

Here's a quick summary of what we will be covering:

Name of the RMarkdown BlockProper Syntax
Heading# Level 1
## Level 2
### Level 3

Level 1
=======

Level 2
-------

Emphasis*Italics*
_Italics_

**Bold**

__Bold__

ListUnordered List
* Item
* Item
+ Sub
+ Sub

Ordered List
1. Item
2. Item
+ Sub
+ Sub

Code ChunkNormal Code Block

```
Code Goes Here
```

R Code Block

```{r}
R CODE
```
You can use other languages also.

Inline `code`

LinksPlain Link: Paste the URL
Link with Caption: [Text](URL_Address)
Link to a section: [Text](#Name-of-section)
Table| Column | Column | Column |
| ------ | ------ | ------ |
| Item | Item | Item |
| Item | Item | Item |
EquationsIn line Equations: $Equations$

Display Equations: $$Equations$$

ImagesWithout Caption: ![](Link-to-Image)

With Caption : ![optional caption text](Location-of-image)

Block Quotes> Type your Block Quotes
MiscSuper Script : Text^Superscript^

Horizontal rule or Page Break:

========= or ----------

For Manual Line break, end line with 2+ spaces

The YAML Header

At the top of a Rmarkdown document, there is a YAML header enclosed within two ---. This block usually contains a title, author, date, and the file type you want to output, defining the final look of the document.

The file type is either HTML, PDF, or Word.

---title: "Sample"author: "It's FOSS"date: "2023-02-08"output: pdf_document---

This can be added while setting the new document in RStudio, which is shown in the above section.

Heading

In R Markdown, we can give heading in two different methods. Either we can use the # character for different levels of heading like:

# Heading Level 1## Heading Level 2### Heading Level 3#### Heading Level 4##### Heading Level 5###### Heading Level 6

Or, = and - for level 1 and 2 headings, respectively.

Level 1 Heading===============Level 2 Heading---------------
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Lists

There are two types of Lists, the first one is an Unordered list, or you could call them bullet points:

* Item 1* Item 2+ Sub 1+ Sub 2* Item 3

And the second one is the Ordered list, which is the numbered type:

1. Item 12. Item 2+ Sub 1+ Sub 23. Item 3
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Read and Organize Markdown Files in Linux Terminal With GlowGlow is a CLI tool that lets you render Markdown files in the Linux terminal. You can also organize Markdown files with it.It's FOSSAbhishek Prakash

Format text within a paragraph

There are several ways to format text.

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You can add emphasis to the text like italics or bold using:

  • Italics: Place the text in between single asterisks or single underscore
  • Bold: Place the text in between double asterisks or double underscores.
*This is Italicized text*_This is Italicized text_**This is Bold Text**__This is Bold Text__

You can explore on this using our resource on how to add bold and italic text in Markdown.

If you want to add superscript to a text, place the text that should be superscript in between ^ symbol.

Normal Text^super_script^

Or, if you want to add text strike-through, place the text in between two ~~ symbol.

~Strike Through this~~
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Adding Code Chunks

Embedding code is the primary purpose of R Markdown. It allows us to add codes in several ways.

Adding Normal code block.

If you want to add a normal code block to separate it from other text, use the syntax below:

```Your Code Goes Here```

You can also try adding code blocks with syntax highlighting.

You should append the language in curly braces if you want to add code and embed its output to the document:

```{Language}Your Code Goes Here```

Or, you can add inline codes by placing the respective text between ` symbols.

The `code` is a code

Here's how it should look like:

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Links

To add a link as plain text, just paste the link as it is in a line.

https://itsfoss.com

Or, to make a text hyperlink, use the syntax:

[Text](URL Address)

Another way to add a link is, when you want to link to a section of the page. In this case, use the syntax:

[Text](#Name-of-section)
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Tables

The syntax for adding tables is similar to that of markdown.

|Column|Column|Column|| --- | --- | --- ||Item|Item|Item||Item|Item|Item|
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Curious to know more? Refer to our guide on creating tables in Markdown.

Images

To add an image, use the syntax:

![](http://example.com/logo.png)OR![optional caption text](figures/img.png)
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Block Quotes

RMarkdown allows you to add block quotes. To use this, use the > (greater than) symbol in front of the line/paragraph you want to quote.

This is a normal text> This is a Block Quote
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If you want to explore more use cases of blockquote, head to our Markdown quotes guide.

Equations

Using RMarkdown, you can add either equations or display complex LaTex equations.

For example:

In line Pythagorean Theorem: $Equation$Display Equation: $$Equation$$
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Horizontal Rule / Page Break

Use three or more asterisks or dashes to add a horizontal rule /page break.

************------------

If you want to add a manual line break, end that line with two or more spaces.

Summary

R Markdown is Useful (Cheat Sheet)

Whether you are working with scientific reports or want to create any other type of dynamic document, R Markdown is your best bet to make the most out of Markdown.

Here's a cheat sheet to help you summarize it all:

Beginner's Guide to R Markdown Syntax [With Cheat Sheet] (20)
R Markdown Cheat SheetR Markdown Cheat Sheet.pdf145 KBdownload-circle

💬 Did we miss something that you use with R Markdown? Share your thoughts in the comments down below.

Beginner's Guide to R Markdown Syntax [With Cheat Sheet] (2024)

FAQs

What is R Markdown syntax? ›

R markdown is a simple and easy to use plain text language used to combine your R code, results from your data analysis (including plots and tables) and written commentary into a single nicely formatted and reproducible document (like a report, publication, thesis chapter or a web page like this one).

How do I write codes in R Markdown? ›

You can insert an R code chunk either using the RStudio toolbar (the Insert button) or the keyboard shortcut Ctrl + Alt + I ( Cmd + Option + I on macOS). There are a large number of chunk options in knitr documented at https://yihui.name/knitr/options.

How do I create my first R Markdown file? ›

Right, time to create your first R markdown document. Within RStudio, click on the menu File -> New File -> R Markdown... . In the pop up window, give the document a 'Title' and enter the 'Author' information (your name) and select HTML as the default output.

What does ### mean in Markdown? ›

To create a heading, add number signs ( # ) in front of a word or phrase. The number of number signs you use should correspond to the heading level. For example, to create a heading level three ( <h3> ), use three number signs (e.g., ### My Header ).

What is $$ in Markdown? ›

Math inside RMarkdown

In side a text chunk, you can use mathematical notation if you surround it by dollar signs $ for “inline mathematics” and $$ for “displayed equations”.

What is the difference between Markdown and R Markdown? ›

RMarkdown and markdown

RMarkdown is an extension to markdown which includes the ability to embed code chunks and several other extensions useful for writing technical reports. See this Rstudio page for a list of all the output formats supported.

How do I start writing code in R? ›

To start writing a new R script in RStudio, click File – New File – R Script. Shortcut! To create a new script in R, you can also use the command–shift–N shortcut on Mac.

How do I create a Markdown code? ›

To create inline code, wrap with backticks ` . To create a code block, either indent each line by 4 spaces, or place 3 backticks ``` on a line above and below the code block. A code block or span displays every character inside exactly as it was typed.

How do you write commands in Markdown? ›

You can call out code or a command within a sentence with single backticks. The text within the backticks will not be formatted. You can also press the Command + E (Mac) or Ctrl + E (Windows/Linux) keyboard shortcut to insert the backticks for a code block within a line of Markdown.

What is the structure of R Markdown? ›

R markdown files have three main pieces: A header that tells the program how to read the document. Text with markdown-style formatting. Code chunks that conduct the analysis.

How to write a report in R Markdown? ›

Using R Markdown to Code in R Studio

Under the “File” tab, click “New File” and “R Markdown”. Name your file and choose the default output format. You can always change the output format later. Once you hit “o*k”, you can now code and write a report on R Markdown.

How do you start a paragraph in R Markdown? ›

TEXT IN R MARKDOWN

Rmd file, you may now add text to your document. You may start with the most basic word processing—simply typing your text below the YAML header section. If you want to start a new paragraph, you can simply hit Enter twice on your key- board, and begin writing again.

What is ``` in Markdown? ›

The basic Markdown syntax allows you to create code blocks by indenting lines by four spaces or one tab. If you find that inconvenient, try using fenced code blocks. Depending on your Markdown processor or editor, you'll use three backticks ( ``` ) or three tildes ( ~~~ ) on the lines before and after the code block.

What are the three hyphens in R Markdown? ›

Basic components of R Markdown

The header is defined by the three hyphens at the beginning ( --- ) and the three hyphens at the end ( --- ). In the YAML, the only required field is the output: , which specifies the type of output you want. This can be an html_document , a pdf_document , or a word_document .

What is the formula for Markdown? ›

To compute markdown given the original price and the new price, you need to apply the formula: Markdown = Original price - Actual price . For instance, if the original price was $100 and the price the good is actually sold for is $80, then the markdown equals $20.

What is Markdown syntax used for? ›

Markdown is an easy-to-use markup language that is used with plain text to add formatting elements (headings, bulleted lists, URLs) to plain text without the use of a formal text editor or the use of HTML tags. Markdown is device agnostic and displays the writing format consistently across device types.

What is meant by syntax in R? ›

R Programming Language Syntax. The syntax of a programming language defines the meaning of specific combinations of words and symbols. This is why we call programming coding. Each programming language uses different combinations of words and symbols to get the computer to follow the instructions specified in your code.

What language is R Markdown written in? ›

An R file contains R programming language code within it, naturally. R Markdown, on the other hand, is a Markdown file ("Markdown is a lightweight markup language for creating formatted text using a plain-text editor" per daringfireball.net/projects/markdown) with R code chunks embedded within it.

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